Publications

This is a non complete list of publications. I only reported the ones I contributed and had fun, the full list can be retrieved using PubMed

  • Giansanti V, Tang M, Cittaro D — Fast analysis of scATAC-seq data using a predefined set of genomic regions. F1000Research 2020, 9:199. doi:10.12688/f1000research.22731.1.
  • Dellino GI, Palluzzi F, Chiariello AM, Piccioni R, Bianco S, Furia L, De Conti G, Bouwman BAM, Melloni G, Guido D, Giacò L, Luzi L, Cittaro D, Faretta M, Nicodemi M, Crosetto N, Pelicci PG — Targeted Release of paused RNA polymerase II at specific loci favors DNA double-strand-break formation and promotes cancer translocations. Nat Genet. 2019 May 20. doi: 10.1038/s41588-019-0421-z.
  • Toffalori C, Zito L, Gambacorta V, Riba M, Oliveira G, Bucci G, Barcella M, Spinelli O, Greco R, Crucitti L, Cieri N, Noviello M, Manfredi F, Montaldo E, Ostuni R, Naldini MM, Gentner B, Waterhouse M, Zeiser R, Finke J, Hanoun M, Beelen DW, Gojo I, Luznik L, Onozawa M, Teshima T, Devillier R, Blaise D, Halkes CJM, Griffioen M, Carrabba MG, Bernardi M, Peccatori J, Barlassina C, Stupka E, Lazarevic D, Tonon G, Rambaldi A, Cittaro D, Bonini C, Fleischhauer K, Ciceri F, Vago L. — Immune Signature Drives Leukemia Escape and Relapse After Hematopoietic Cell Transplantation. Nat Med. 2019 Mar 25. doi: 10.1038/s41591-019-0400-z
  • Gaviraghi M, Vivori C, Pareja Sanchez Y, Invernizzi F, Cattaneo A, Santoliquido BM, Frenquelli M, Segalla S, Bachi A, Doglioni C, Pelechano V, Cittaro D, Tonon G. — Tumor suppressor PNRC1 blocks rRNA maturation by recruiting the decapping complex to the nucleolus. EMBO J. 2018 Oct 29. pii: e99179. doi: 10.15252/embj.201899179.
  • Amabile A, Migliara A, Capasso P, Biffi M, Cittaro D, Naldini L, Lombardo A - Inheritable Silencing of Endogenous Genes by Hit-and-Run Targeted Epigenetic Editing. Cell. 2016 Sep 22;167(1):219-232.e14. doi: 10.1016/j.cell.2016.09.006.
  • Riba M, Garcia Manteiga JM, Bošnjak B, Cittaro D, Mikolka P, Le C, Epstein MM, Stupka E - Revealing the acute asthma ignorome: characterization and validation of uninvestigated gene networks. Sci Rep. 2016 Apr 21;6:24647. doi: 10.1038/srep24647.
  • Cittaro D, Lazarevic D, Provero P - Chromas from chromatin: sonification of the epigenome. F1000Res. 2016 Mar 3;5:274. doi: 10.12688/f1000research.8001.1. eCollection 2016.
  • Rondinelli B, Rosano D, Antonini E, Frenquelli M, Montanini L, Huang D, Segalla S, Yoshihara K, Amin SB, Lazarevic D, The BT, Verhaak RG, Futreal PA, Di Croce L, Chin L, Cittaro D, Tonon G. - Histone demethylase JARID1C inactivation triggers genomic instability in sporadic renal cancer. J Clin Invest. 2015 Nov 9. pii: 81040.
  • Dellino GI, Cittaro D, Piccioni R, Luzi L, Banfi S, Segalla S, Cesaroni M, Mendoza-Maldonado R, Giacca M, Pelicci PG. - Genome-wide mapping of human DNA-replication origins: levels of transcription at ORC1 sites regulate origin selection and replication timing. Genome Res. 2013 Jan;23(1):1-11.
  • Fumagalli M, Rossiello F, Clerici M, Barozzi S, Cittaro D, Kaplunov JM, Bucci G, Dobreva M, Matti V, Beausejour CM, Herbig U, Longhese MP, d’Adda di Fagagna F. - Telomeric DNA damage is irreparable and causes persistent DNA-damage-response activation. Nat Cell Biol. 2012 Mar 18;14(4):355-65.
  • Maiolica A, Cittaro D, Borsotti D, Sennels L, Ciferri C, Tarricone C, Musacchio A and Rappsilber J - Structural analysis of multi-protein complexes by cross-linking, mass spectrometry and database searching. Mol Cell Proteomics. 2007 Dec;6(12):2200-11.
  • Cittaro D, Borsotti D, Maiolica A, Argenzio E, Rappsilber J - Peptide Identification Using Vectors of Small Fragment Ions. J. Proteome Res. 2005 May-Jun; 4 (3):1006-11.